PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g14130.1
Common NameLR48_Vigan10g280500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 95aa    MW: 10900.6 Da    PI: 10.7666
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g14130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-122341145
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +l+++++++G + W++Ia+++  gRt++++k+rw+
   Vang02g14130.1  2 ILIKGHQEFGRK-WSKIAKRLS-GRTENDIKNRWN 34
                     69********99.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.775141IPR017930Myb domain
SMARTSM007172.8E-4139IPR001005SANT/Myb domain
PfamPF002491.6E-10234IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-15238IPR009057Homeodomain-like
SuperFamilySSF466893.21E-11242IPR009057Homeodomain-like
CDDcd001676.67E-8234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MILIKGHQEF GRKWSKIAKR LSGRTENDIK NRWNATIRRQ NCNKNSKAHY KGSILHAYVK  60
WVTATEDKVL RKPSDKKNQN VFGCTCDELA LLLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-158AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151013.14e-37hypothetical protein PHAVU_004G011400g
SwissprotQ9S7L21e-14MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A0L9VPM63e-63A0A0L9VPM6_PHAAN; Uncharacterized protein
STRINGGLYMA05G08761.11e-20(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143361018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-16myb domain protein 98
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]